1. SeqSolve
Simple analysis of Next Generation Sequencing data.
标签:RNA-Seq, ChIP-Seq,Transcriptomics, Small RNA transcriptome
2. CASHX
Parse, map, quantify and manage large quantities of short-read sequence data.
标签:Small RNA transcriptome
3. SeqBuster
SeqBuster, a web-based bioinformatic tool offering a custom analysis of deep sequencing data at different levels, with special emphasis on the analysis of miRNA variants or isomiRs and the discovering of new small RNAs.
标签:Small RNA transcriptome, MiRNA
4. MirTools
Web server for microRNA profiling and discovery based on high-throughput sequencing
标签:Small RNA transcriptome, MiRNA
5. E-miR
Perl tools for processing miRNA sequencing data
标签:Small RNA transcriptome, MiRNA
6. DSAP
Automated multiple-task web service designed to provide a total solution to analyzing deep-sequencing small RNA datasets generated by next-generation sequencing technology
标签:Small RNA transcriptome, MiRNA
7. Partek Genomics Suite
Easy to use software providing A to Z analysis for all Next Generation Sequencing and Microarray data.
标签:Allele-specific transcription,RNA-Seq Quantitation,Epigenomics, Functional Genomics, ChIP-Seq,Alternative Splicing, SNP discovery, Small RNA transcriptome
8. Syapse
Syapse is a platform and application suite for bringing together omics and clinical data.
标签:Allele-specific transcription,DNA methylation, DNA-Seq,InDel discovery, SNP discovery, Structural variation, RNA-Seq, Small RNA transcriptome, ChIP-Seq,Comparative genomics,Comparative transcriptomics,Epigenomics, Genomics,Personal genomics, Population ge
9. VisSR
VisSR (Visualisation of sRNAs): generate a visual representation of sRNAs and user-imported genomic features.
标签:Small RNA transcriptome